IL_5JUU_190
3D structure
- PDB id
- 5JUU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- CUC*GUGAG
- Length
- 8 nucleotides
- Bulged bases
- 5JUU|1|B|G|2945, 5JUU|1|B|A|2946
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUU_190 not in the Motif Atlas
- Homologous match to IL_5TBW_108
- Geometric discrepancy: 0.1426
- The information below is about IL_5TBW_108
- Detailed Annotation
- Isolated non-canonical cWW with bulges
- Broad Annotation
- Isolated non-canonical cWW with bulges
- Motif group
- IL_54650.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
5JUU|1|B|C|2879
5JUU|1|B|U|2880
5JUU|1|B|C|2881
*
5JUU|1|B|G|2943
5JUU|1|B|U|2944
5JUU|1|B|G|2945
5JUU|1|B|A|2946
5JUU|1|B|G|2947
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain AA
- uL14 (yeast L23)
- Chain G
- uL3 (yeast L3)
Coloring options: