IL_5JUU_203

3D structure

PDB id

5JUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CACAC*GCGUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUU_203 not in the Motif Atlas

Homologous match to IL_5TBW_121

Geometric discrepancy: 0.2222

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

5JUU|1|B|C|3162
5JUU|1|B|A|3163
5JUU|1|B|C|3164
5JUU|1|B|A|3165
5JUU|1|B|C|3166
*
5JUU|1|B|G|3284
5JUU|1|B|C|3285
5JUU|1|B|G|3286
5JUU|1|B|U|3287
5JUU|1|B|G|3288

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain U

uL22 (yeast L17)