IL_5JUU_211
3D structure
- PDB id
- 5JUU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- UUUG*CUUA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUU_211 not in the Motif Atlas
- Geometric match to IL_6MWN_005
- Geometric discrepancy: 0.2483
- The information below is about IL_6MWN_005
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_77658.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 34
Unit IDs
5JUU|1|B|U|3300
5JUU|1|B|U|3301
5JUU|1|B|U|3302
5JUU|1|B|G|3303
*
5JUU|1|B|C|3311
5JUU|1|B|U|3312
5JUU|1|B|U|3313
5JUU|1|B|A|3314
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain G
- uL3 (yeast L3)
- Chain IA
- eL31 (yeast L31)
- Chain U
- uL22 (yeast L17)
Coloring options: