IL_5JUU_220
3D structure
- PDB id
- 5JUU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- UAA*UCGA
- Length
- 7 nucleotides
- Bulged bases
- 5JUU|1|C|G|95
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUU_220 not in the Motif Atlas
- Homologous match to IL_5TBW_145
- Geometric discrepancy: 0.2157
- The information below is about IL_5TBW_145
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_54650.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
5JUU|1|C|U|64
5JUU|1|C|A|65
5JUU|1|C|A|66
*
5JUU|1|C|U|93
5JUU|1|C|C|94
5JUU|1|C|G|95
5JUU|1|C|A|96
Current chains
- Chain C
- 5.8S ribosomal RNA
Nearby chains
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain DA
- uL24 (yeast L26)
- Chain MA
- uL29 (yeast L35)
- Chain OA
- eL37 (yeast L37)
Coloring options: