IL_5JUU_227

3D structure

PDB id

5JUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AGUG*CAU

Length

7 nucleotides

Bulged bases

5JUU|1|D|U|86

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUU_227 not in the Motif Atlas

Homologous match to IL_5TBW_378

Geometric discrepancy: 0.1283

The information below is about IL_5TBW_378

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

5JUU|1|D|A|84
5JUU|1|D|G|85
5JUU|1|D|U|86
5JUU|1|D|G|87
*
5JUU|1|D|C|94
5JUU|1|D|A|95
5JUU|1|D|U|96

Current chains

Chain D

5S ribosomal RNA

Nearby chains

Chain B

Large subunit ribosomal RNA; LSU rRNA

Chain K

uL30 (yeast L7)

Chain N

uL16 (yeast L10)

Chain X

eL20 (yeast L20)