IL_5JVH_021

3D structure

PDB id

5JVH (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

UGUUG*UUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JVH_021 not in the Motif Atlas

Homologous match to IL_4WF9_029

Geometric discrepancy: 0.2977

The information below is about IL_4WF9_029

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01742.1

Basepair signature

cWW-L-cWW-R-cWW

Number of instances in this motif group

3

Unit IDs

5JVH|1|X|U|857
5JVH|1|X|G|858
5JVH|1|X|U|859
5JVH|1|X|U|860
5JVH|1|X|G|861
*
5JVH|1|X|U|942
5JVH|1|X|U|943
5JVH|1|X|A|944
5JVH|1|X|G|945

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain W

50S ribosomal protein L30