IL_5JVH_027

3D structure

PDB id

5JVH (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

ACA*UAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JVH_027 not in the Motif Atlas

Homologous match to IL_7A0S_030

Geometric discrepancy: 0.1339

The information below is about IL_7A0S_030

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_42997.6

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

26

Unit IDs

5JVH|1|X|A|883
5JVH|1|X|C|884
5JVH|1|X|A|885
*
5JVH|1|X|U|917
5JVH|1|X|A|918
5JVH|1|X|U|919

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L16

Chain S

50S ribosomal protein L25