IL_5JVH_030
3D structure
- PDB id
- 5JVH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.58 Å
Loop
- Sequence
- CUAAG*CGAAG
- Length
- 10 nucleotides
- Bulged bases
- 5JVH|1|X|A|1167
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JVH_030 not in the Motif Atlas
- Homologous match to IL_7A0S_033
- Geometric discrepancy: 0.0742
- The information below is about IL_7A0S_033
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_08938.2
- Basepair signature
- cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 25
Unit IDs
5JVH|1|X|C|1009
5JVH|1|X|U|1010
5JVH|1|X|A|1011
5JVH|1|X|A|1012
5JVH|1|X|G|1013
*
5JVH|1|X|C|1164
5JVH|1|X|G|1165
5JVH|1|X|A|1166
5JVH|1|X|A|1167
5JVH|1|X|G|1168
Current chains
- Chain X
- 23S ribosomal RNA
Nearby chains
- Chain N
- 50S ribosomal protein L20
- Chain O
- 50S ribosomal protein L21
- Chain W
- 50S ribosomal protein L30
- Chain Y
- 5S ribosomal RNA; 5S rRNA
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