IL_5JVH_041

3D structure

PDB id

5JVH (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

CGGAGAAG*UGGAG

Length

13 nucleotides

Bulged bases

5JVH|1|X|A|1224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JVH_041 not in the Motif Atlas

Homologous match to IL_4WF9_046

Geometric discrepancy: 0.1299

The information below is about IL_4WF9_046

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

5JVH|1|X|C|1221
5JVH|1|X|G|1222
5JVH|1|X|G|1223
5JVH|1|X|A|1224
5JVH|1|X|G|1225
5JVH|1|X|A|1226
5JVH|1|X|A|1227
5JVH|1|X|G|1228
*
5JVH|1|X|U|1247
5JVH|1|X|G|1248
5JVH|1|X|G|1249
5JVH|1|X|A|1250
5JVH|1|X|G|1251

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L20

Chain P

50S ribosomal protein L22