IL_5JVH_042

3D structure

PDB id

5JVH (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

AUAC*GAGU

Length

8 nucleotides

Bulged bases

5JVH|1|X|A|1233

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JVH_042 not in the Motif Atlas

Geometric match to IL_4QIK_001

Geometric discrepancy: 0.3683

The information below is about IL_4QIK_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32983.2

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

5JVH|1|X|A|1231
5JVH|1|X|U|1232
5JVH|1|X|A|1233
5JVH|1|X|C|1234
*
5JVH|1|X|G|1241
5JVH|1|X|A|1242
5JVH|1|X|G|1243
5JVH|1|X|U|1244

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L20

Chain O

50S ribosomal protein L21