IL_5JVH_043

3D structure

PDB id

5JVH (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

AUGAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JVH_043 not in the Motif Atlas

Homologous match to IL_7A0S_045

Geometric discrepancy: 0.0534

The information below is about IL_7A0S_045

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.4

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

5JVH|1|X|A|1275
5JVH|1|X|U|1276
5JVH|1|X|G|1277
5JVH|1|X|A|1278
5JVH|1|X|G|1279
5JVH|1|X|U|1280
5JVH|1|X|A|1281
5JVH|1|X|A|1282
*
5JVH|1|X|U|1994
5JVH|1|X|G|1995
5JVH|1|X|A|1996
5JVH|1|X|A|1997
5JVH|1|X|A|1998
5JVH|1|X|U|1999
5JVH|1|X|U|2000

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain P

50S ribosomal protein L22

Chain Z

50S ribosomal protein L32