IL_5JVH_047

3D structure

PDB id

5JVH (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

UGAGG*CGCAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JVH_047 not in the Motif Atlas

Homologous match to IL_7A0S_049

Geometric discrepancy: 0.0937

The information below is about IL_7A0S_049

Detailed Annotation

tSH-tWH-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.2

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

19

Unit IDs

5JVH|1|X|U|1370
5JVH|1|X|G|1371
5JVH|1|X|A|1372
5JVH|1|X|G|1373
5JVH|1|X|G|1374
*
5JVH|1|X|C|1383
5JVH|1|X|G|1384
5JVH|1|X|C|1385
5JVH|1|X|A|1386
5JVH|1|X|G|1387

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain A

50S ribosomal protein L2

Chain U

50S ribosomal protein L28