IL_5JVH_051

3D structure

PDB id

5JVH (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

CUAU*AAACG

Length

9 nucleotides

Bulged bases

5JVH|1|X|C|1570

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JVH_051 not in the Motif Atlas

Homologous match to IL_7A0S_053

Geometric discrepancy: 0.0938

The information below is about IL_7A0S_053

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_74317.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

5JVH|1|X|C|1451
5JVH|1|X|U|1452
5JVH|1|X|A|1453
5JVH|1|X|U|1454
*
5JVH|1|X|A|1567
5JVH|1|X|A|1568
5JVH|1|X|A|1569
5JVH|1|X|C|1570
5JVH|1|X|G|1571

Current chains

Chain X

23S ribosomal RNA

Nearby chains