IL_5JVH_054

3D structure

PDB id

5JVH (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

CAAG*UCAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JVH_054 not in the Motif Atlas

Geometric match to IL_4WF9_087

Geometric discrepancy: 0.1984

The information below is about IL_4WF9_087

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.3

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

47

Unit IDs

5JVH|1|X|C|1491
5JVH|1|X|A|1492
5JVH|1|X|A|1493
5JVH|1|X|G|1494
*
5JVH|1|X|U|1530
5JVH|1|X|C|1531
5JVH|1|X|A|1532
5JVH|1|X|G|1533

Current chains

Chain X

23S ribosomal RNA

Nearby chains