IL_5JVH_058

3D structure

PDB id

5JVH (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

CGUAAC*GAAGAAG

Length

13 nucleotides

Bulged bases

5JVH|1|X|G|1716

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JVH_058 not in the Motif Atlas

Geometric match to IL_7A0S_063

Geometric discrepancy: 0.0868

The information below is about IL_7A0S_063

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_20700.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

11

Unit IDs

5JVH|1|X|C|1703
5JVH|1|X|G|1704
5JVH|1|X|U|1705
5JVH|1|X|A|1706
5JVH|1|X|A|1707
5JVH|1|X|C|1708
*
5JVH|1|X|G|1713
5JVH|1|X|A|1714
5JVH|1|X|A|1715
5JVH|1|X|G|1716
5JVH|1|X|A|1717
5JVH|1|X|A|1718
5JVH|1|X|G|1719

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2