IL_5JVH_064
3D structure
- PDB id
- 5JVH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.58 Å
Loop
- Sequence
- UCAAGUGGAG*CGAAAUGAAG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JVH_064 not in the Motif Atlas
- Homologous match to IL_5J7L_387
- Geometric discrepancy: 0.4854
- The information below is about IL_5J7L_387
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_61249.1
- Basepair signature
- cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
5JVH|1|X|U|1843
5JVH|1|X|C|1844
5JVH|1|X|A|1845
5JVH|1|X|A|1846
5JVH|1|X|G|1847
5JVH|1|X|U|1848
5JVH|1|X|G|1849
5JVH|1|X|G|1850
5JVH|1|X|A|1851
5JVH|1|X|G|1852
*
5JVH|1|X|C|1865
5JVH|1|X|G|1866
5JVH|1|X|A|1867
5JVH|1|X|A|1868
5JVH|1|X|A|1869
5JVH|1|X|U|1870
5JVH|1|X|G|1871
5JVH|1|X|A|1872
5JVH|1|X|A|1873
5JVH|1|X|G|1874
Current chains
- Chain X
- 23S ribosomal RNA
Nearby chains
- Chain A
- 50S ribosomal protein L2
- Chain U
- 50S ribosomal protein L28
Coloring options: