IL_5JVH_086
3D structure
- PDB id
- 5JVH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.58 Å
Loop
- Sequence
- UUGAG*CAAGAUGAG
- Length
- 14 nucleotides
- Bulged bases
- 5JVH|1|X|G|2760
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JVH_086 not in the Motif Atlas
- Homologous match to IL_7A0S_093
- Geometric discrepancy: 0.0694
- The information below is about IL_7A0S_093
- Detailed Annotation
- tSH-tHS-tHW
- Broad Annotation
- tSH-tHS-tHW
- Motif group
- IL_04638.4
- Basepair signature
- cWW-tSH-tHW-tHS-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
5JVH|1|X|U|2615
5JVH|1|X|U|2616
5JVH|1|X|G|2617
5JVH|1|X|A|2618
5JVH|1|X|G|2619
*
5JVH|1|X|C|2754
5JVH|1|X|A|2755
5JVH|1|X|A|2756
5JVH|1|X|G|2757
5JVH|1|X|A|2758
5JVH|1|X|U|2759
5JVH|1|X|G|2760
5JVH|1|X|A|2761
5JVH|1|X|G|2762
Current chains
- Chain X
- 23S ribosomal RNA
Nearby chains
- Chain B
- 50S ribosomal protein L3
- Chain G
- 50S ribosomal protein L13
Coloring options: