IL_5JVH_087

3D structure

PDB id

5JVH (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JVH_087 not in the Motif Atlas

Geometric match to IL_7A0S_094

Geometric discrepancy: 0.0777

The information below is about IL_7A0S_094

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.6

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

5JVH|1|X|C|2631
5JVH|1|X|U|2632
5JVH|1|X|A|2633
5JVH|1|X|G|2634
5JVH|1|X|U|2635
5JVH|1|X|A|2636
5JVH|1|X|C|2637
*
5JVH|1|X|G|2642
5JVH|1|X|G|2643
5JVH|1|X|A|2644
5JVH|1|X|C|2645
5JVH|1|X|C|2646
5JVH|1|X|G|2647

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L6

Chain H

50S ribosomal protein L14