IL_5JVH_095

3D structure

PDB id

5JVH (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

CAC*GCAG

Length

7 nucleotides

Bulged bases

5JVH|1|Y|A|68

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JVH_095 not in the Motif Atlas

Geometric match to IL_3C3Z_002

Geometric discrepancy: 0.2441

The information below is about IL_3C3Z_002

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

5JVH|1|Y|C|19
5JVH|1|Y|A|20
5JVH|1|Y|C|21
*
5JVH|1|Y|G|66
5JVH|1|Y|C|67
5JVH|1|Y|A|68
5JVH|1|Y|G|69

Current chains

Chain Y

5S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L5

Chain X

Large subunit ribosomal RNA; LSU rRNA