IL_5JVH_100

3D structure

PDB id

5JVH (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

GGC*GACC

Length

7 nucleotides

Bulged bases

5JVH|1|X|A|455

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JVH_100 not in the Motif Atlas

Geometric match to IL_6IA2_002

Geometric discrepancy: 0.1913

The information below is about IL_6IA2_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

5JVH|1|X|G|35
5JVH|1|X|G|36
5JVH|1|X|C|37
*
5JVH|1|X|G|454
5JVH|1|X|A|455
5JVH|1|X|C|456
5JVH|1|X|C|457

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain N

50S ribosomal protein L20

Chain R

50S ribosomal protein L24