IL_5K0Y_002

3D structure

PDB id

5K0Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

CAAA*UGACG

Length

9 nucleotides

Bulged bases

5K0Y|1|A|A|506

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5K0Y_002 not in the Motif Atlas

Geometric match to IL_4WF9_016

Geometric discrepancy: 0.3615

The information below is about IL_4WF9_016

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

5K0Y|1|A|C|37
5K0Y|1|A|A|38
5K0Y|1|A|A|39
5K0Y|1|A|A|40
*
5K0Y|1|A|U|504
5K0Y|1|A|G|505
5K0Y|1|A|A|506
5K0Y|1|A|C|507
5K0Y|1|A|G|508

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain I

40S ribosomal protein S4

Chain K

Ribosomal protein S9 (Predicted)