IL_5K0Y_005
3D structure
- PDB id
- 5K0Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- UCUAAG*CUG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5K0Y_005 not in the Motif Atlas
- Homologous match to IL_4V88_389
- Geometric discrepancy: 0.3648
- The information below is about IL_4V88_389
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_61299.2
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 3
Unit IDs
5K0Y|1|A|U|57
5K0Y|1|A|C|58
5K0Y|1|A|U|59
5K0Y|1|A|A|60
5K0Y|1|A|A|61
5K0Y|1|A|G|62
*
5K0Y|1|A|C|86
5K0Y|1|A|U|87
5K0Y|1|A|G|88
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain I
- 40S ribosomal protein S4
- Chain q
- 40S ribosomal protein S6
- Chain s
- 40S ribosomal protein S24
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