IL_5K0Y_010
3D structure
- PDB id
- 5K0Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- UCCUUU*AUUCG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5K0Y_010 not in the Motif Atlas
- Homologous match to IL_4V88_393
- Geometric discrepancy: 0.2305
- The information below is about IL_4V88_393
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_37842.2
- Basepair signature
- cWW-cWW-L-R-cWW-cWW-R-L
- Number of instances in this motif group
- 4
Unit IDs
5K0Y|1|A|U|116
5K0Y|1|A|C|117
5K0Y|1|A|C|118
5K0Y|1|A|U|119
5K0Y|1|A|U|120
5K0Y|1|A|U|121
*
5K0Y|1|A|A|333
5K0Y|1|A|U|334
5K0Y|1|A|U|335
5K0Y|1|A|C|336
5K0Y|1|A|G|337
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain I
- 40S ribosomal protein S4
- Chain o
- 40S ribosomal protein S8
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