IL_5K0Y_016

3D structure

PDB id

5K0Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

GAU*AC

Length

5 nucleotides

Bulged bases

5K0Y|1|A|A|304

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5K0Y_016 not in the Motif Atlas

Homologous match to IL_4V88_399

Geometric discrepancy: 0.2356

The information below is about IL_4V88_399

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

5K0Y|1|A|G|303
5K0Y|1|A|A|304
5K0Y|1|A|U|305
*
5K0Y|1|A|A|326
5K0Y|1|A|C|327

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain I

40S ribosomal protein S4

Chain q

40S ribosomal protein S6