IL_5K0Y_040

3D structure

PDB id

5K0Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

AG*CAUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5K0Y_040 not in the Motif Atlas

Geometric match to IL_6N5P_003

Geometric discrepancy: 0.1975

The information below is about IL_6N5P_003

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

33

Unit IDs

5K0Y|1|A|A|918
5K0Y|1|A|G|919
*
5K0Y|1|A|C|1015
5K0Y|1|A|A|1016
5K0Y|1|A|U|1017
5K0Y|1|A|U|1018

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain Y

40S ribosomal protein S27

Chain Z

ribosomal protein uS15

Chain a

ribosomal protein uS8