IL_5K0Y_041
3D structure
- PDB id
- 5K0Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- GAC*GUUU
- Length
- 7 nucleotides
- Bulged bases
- 5K0Y|1|A|U|1012
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5K0Y_041 not in the Motif Atlas
- Geometric match to IL_6CZR_128
- Geometric discrepancy: 0.2294
- The information below is about IL_6CZR_128
- Detailed Annotation
- Single bulged G, near cWW
- Broad Annotation
- Single bulged G, near cWW
- Motif group
- IL_52767.5
- Basepair signature
- cWW-L-R-cWW
- Number of instances in this motif group
- 28
Unit IDs
5K0Y|1|A|G|921
5K0Y|1|A|A|922
5K0Y|1|A|C|923
*
5K0Y|1|A|G|1010
5K0Y|1|A|U|1011
5K0Y|1|A|U|1012
5K0Y|1|A|U|1013
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain Y
- 40S ribosomal protein S27
- Chain Z
- ribosomal protein uS15
- Chain a
- ribosomal protein uS8
Coloring options: