IL_5K0Y_046
3D structure
- PDB id
- 5K0Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- AGGUUC*GUU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5K0Y_046 not in the Motif Atlas
- Homologous match to IL_4V88_435
- Geometric discrepancy: 0.2421
- The information below is about IL_4V88_435
- Detailed Annotation
- Other IL
- Broad Annotation
- Other IL
- Motif group
- IL_22046.1
- Basepair signature
- cWW-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
5K0Y|1|A|A|1038
5K0Y|1|A|G|1039
5K0Y|1|A|G|1040
5K0Y|1|A|U|1041
5K0Y|1|A|U|1042
5K0Y|1|A|C|1043
*
5K0Y|1|A|G|1067
5K0Y|1|A|U|1068
5K0Y|1|A|U|1069
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain j
- ribosomal protein uS11
- Chain k
- ribosomal protein eS26
Coloring options: