IL_5K0Y_059

3D structure

PDB id

5K0Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

GACAGGA*UUC

Length

10 nucleotides

Bulged bases

5K0Y|1|A|G|1281

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5K0Y|1|A|G|1277
5K0Y|1|A|A|1278
5K0Y|1|A|C|1279
5K0Y|1|A|A|1280
5K0Y|1|A|G|1281
5K0Y|1|A|G|1282
5K0Y|1|A|A|1283
*
5K0Y|1|A|U|1310
5K0Y|1|A|U|1311
5K0Y|1|A|C|1312

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain p

ribosomal protein eS31

Chain r

40S ribosomal protein S12

Chain t

ribosomal protein eS10