IL_5K0Y_069

3D structure

PDB id

5K0Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

CAUGC*GAGG

Length

9 nucleotides

Bulged bases

5K0Y|1|A|U|1393

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5K0Y_069 not in the Motif Atlas

Geometric match to IL_4V88_429

Geometric discrepancy: 0.387

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

5K0Y|1|A|C|1391
5K0Y|1|A|A|1392
5K0Y|1|A|U|1393
5K0Y|1|A|G|1394
5K0Y|1|A|C|1395
*
5K0Y|1|A|G|1443
5K0Y|1|A|A|1444
5K0Y|1|A|G|1445
5K0Y|1|A|G|1446

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain H

ribosomal protein uS9

Chain e

ribosomal protein eS17

Chain h

ribosomal protein uS10

Chain m

ribosomal protein RACK1