IL_5K0Y_070
3D structure
- PDB id
- 5K0Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- ACUAG*CUUCU
- Length
- 10 nucleotides
- Bulged bases
- 5K0Y|1|A|C|1399, 5K0Y|1|A|U|1400
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5K0Y_070 not in the Motif Atlas
- Homologous match to IL_8CRE_459
- Geometric discrepancy: 0.3379
- The information below is about IL_8CRE_459
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5K0Y|1|A|A|1398
5K0Y|1|A|C|1399
5K0Y|1|A|U|1400
5K0Y|1|A|A|1401
5K0Y|1|A|G|1402
*
5K0Y|1|A|C|1436
5K0Y|1|A|U|1437
5K0Y|1|A|U|1438
5K0Y|1|A|C|1439
5K0Y|1|A|U|1440
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain H
- ribosomal protein uS9
- Chain g
- ribosomal protein uS3
- Chain h
- ribosomal protein uS10
- Chain m
- ribosomal protein RACK1
Coloring options: