IL_5K0Y_079
3D structure
- PDB id
- 5K0Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- GGGAUCG*CAUGAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5K0Y_079 not in the Motif Atlas
- Homologous match to IL_8C3A_469
- Geometric discrepancy: 0.1564
- The information below is about IL_8C3A_469
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_10092.1
- Basepair signature
- cWW-tSH-tSH-L-R-cWW-L-R-cWW
- Number of instances in this motif group
- 1
Unit IDs
5K0Y|1|A|G|1599
5K0Y|1|A|G|1600
5K0Y|1|A|G|1601
5K0Y|1|A|A|1602
5K0Y|1|A|U|1603
5K0Y|1|A|C|1604
5K0Y|1|A|G|1605
*
5K0Y|1|A|C|1624
5K0Y|1|A|A|1625
5K0Y|1|A|U|1626
5K0Y|1|A|G|1627
5K0Y|1|A|A|1628
5K0Y|1|A|A|1629
5K0Y|1|A|C|1630
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain L
- ribosomal protein uS13
- Chain R
- ribosomal protein eS19
- Chain U
- ribosomal protein uS7
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