IL_5KCR_004
3D structure
- PDB id
- 5KCR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GUAAG*CGUUAUAAC
- Length
- 14 nucleotides
- Bulged bases
- 5KCR|1|1A|U|102
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5KCR_004 not in the Motif Atlas
- Homologous match to IL_5J7L_248
- Geometric discrepancy: 0.039
- The information below is about IL_5J7L_248
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_37015.1
- Basepair signature
- cWW-tSS-tSS-tHH-L-tHS-L-R-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
5KCR|1|1A|G|81
5KCR|1|1A|U|82
5KCR|1|1A|A|83
5KCR|1|1A|A|84
5KCR|1|1A|G|85
*
5KCR|1|1A|C|97
5KCR|1|1A|G|98
5KCR|1|1A|U|99
5KCR|1|1A|U|100
5KCR|1|1A|A|101
5KCR|1|1A|U|102
5KCR|1|1A|A|103
5KCR|1|1A|A|104
5KCR|1|1A|C|105
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 12
- 50S ribosomal protein L29
- Chain 1Y
- 50S ribosomal protein L24
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