IL_5KCR_065

3D structure

PDB id

5KCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

5KCR|1|1A|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KCR_065 not in the Motif Atlas

Homologous match to IL_5J7L_308

Geometric discrepancy: 0.042

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

5KCR|1|1A|C|1686
5KCR|1|1A|G|1687
5KCR|1|1A|U|1688
5KCR|1|1A|A|1689
5KCR|1|1A|A|1690
5KCR|1|1A|C|1691
*
5KCR|1|1A|G|1696
5KCR|1|1A|G|1697
5KCR|1|1A|A|1698
5KCR|1|1A|G|1699
5KCR|1|1A|A|1700
5KCR|1|1A|A|1701
5KCR|1|1A|G|1702

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1D

50S ribosomal protein L2

Chain 1a

Small subunit ribosomal RNA; SSU rRNA