IL_5KCR_076
3D structure
- PDB id
- 5KCR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CGAAA(5MU)UCCUUG*C(5MC)UG
- Length
- 16 nucleotides
- Bulged bases
- 5KCR|1|1A|A|1938, 5KCR|1|1A|U|1944
- QA status
- Modified nucleotides: 5MU, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5KCR_076 not in the Motif Atlas
- Geometric match to IL_7A0S_072
- Geometric discrepancy: 0.1442
- The information below is about IL_7A0S_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04332.3
- Basepair signature
- cWW-L-R-L-cWW-L-L-R-L-R-L
- Number of instances in this motif group
- 2
Unit IDs
5KCR|1|1A|C|1934
5KCR|1|1A|G|1935
5KCR|1|1A|A|1936
5KCR|1|1A|A|1937
5KCR|1|1A|A|1938
5KCR|1|1A|5MU|1939
5KCR|1|1A|U|1940
5KCR|1|1A|C|1941
5KCR|1|1A|C|1942
5KCR|1|1A|U|1943
5KCR|1|1A|U|1944
5KCR|1|1A|G|1945
*
5KCR|1|1A|C|1961
5KCR|1|1A|5MC|1962
5KCR|1|1A|U|1963
5KCR|1|1A|G|1964
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1D
- 50S ribosomal protein L2
- Chain 1a
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: