IL_5KCR_085

3D structure

PDB id

5KCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAUGUGUAGGAUAGGUG*CACCCUUU

Length

25 nucleotides

Bulged bases

5KCR|1|1A|A|2119

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KCR_085 not in the Motif Atlas

Geometric match to IL_5J7L_328

Geometric discrepancy: 0.0982

The information below is about IL_5J7L_328

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20245.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

Number of instances in this motif group

1

Unit IDs

5KCR|1|1A|G|2107
5KCR|1|1A|A|2108
5KCR|1|1A|U|2109
5KCR|1|1A|G|2110
5KCR|1|1A|U|2111
5KCR|1|1A|G|2112
5KCR|1|1A|U|2113
5KCR|1|1A|A|2114
5KCR|1|1A|G|2115
5KCR|1|1A|G|2116
5KCR|1|1A|A|2117
5KCR|1|1A|U|2118
5KCR|1|1A|A|2119
5KCR|1|1A|G|2120
5KCR|1|1A|G|2121
5KCR|1|1A|U|2122
5KCR|1|1A|G|2123
*
5KCR|1|1A|C|2175
5KCR|1|1A|A|2176
5KCR|1|1A|C|2177
5KCR|1|1A|C|2178
5KCR|1|1A|C|2179
5KCR|1|1A|U|2180
5KCR|1|1A|U|2181
5KCR|1|1A|U|2182

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains