IL_5KCR_091

3D structure

PDB id

5KCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUC*GG

Length

5 nucleotides

Bulged bases

5KCR|1|1A|U|2402

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KCR_091 not in the Motif Atlas

Homologous match to IL_5J7L_334

Geometric discrepancy: 0.1983

The information below is about IL_5J7L_334

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

5KCR|1|1A|U|2401
5KCR|1|1A|U|2402
5KCR|1|1A|C|2403
*
5KCR|1|1A|G|2414
5KCR|1|1A|G|2415

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 16

50S ribosomal protein L33

Chain 18

50S ribosomal protein L35

Chain 1P

50S ribosomal protein L15