IL_5KCR_159

3D structure

PDB id

5KCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAAGU*AUGUGCCUUCGGGAAC

Length

21 nucleotides

Bulged bases

5KCR|1|1a|U|1025, 5KCR|1|1a|U|1030, 5KCR|1|1a|C|1031, 5KCR|1|1a|G|1032

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5KCR|1|1a|G|1003
5KCR|1|1a|A|1004
5KCR|1|1a|A|1005
5KCR|1|1a|G|1006
5KCR|1|1a|U|1007
*
5KCR|1|1a|A|1022
5KCR|1|1a|U|1023
5KCR|1|1a|G|1024
5KCR|1|1a|U|1025
5KCR|1|1a|G|1026
5KCR|1|1a|C|1027
5KCR|1|1a|C|1028
5KCR|1|1a|U|1029
5KCR|1|1a|U|1030
5KCR|1|1a|C|1031
5KCR|1|1a|G|1032
5KCR|1|1a|G|1033
5KCR|1|1a|G|1034
5KCR|1|1a|A|1035
5KCR|1|1a|A|1036
5KCR|1|1a|C|1037

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1n

30S ribosomal protein S14