IL_5KCR_183

3D structure

PDB id

5KCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAAA*UC

Length

6 nucleotides

Bulged bases

5KCR|1|1A|A|1088

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KCR_183 not in the Motif Atlas

Homologous match to IL_5J7L_385

Geometric discrepancy: 0.1606

The information below is about IL_5J7L_385

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.6

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

5KCR|1|1A|G|1087
5KCR|1|1A|A|1088
5KCR|1|1A|A|1089
5KCR|1|1A|A|1090
*
5KCR|1|1A|U|1101
5KCR|1|1A|C|1102

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L36

Chain 1K

50S ribosomal protein L11