IL_5KCS_007

3D structure

PDB id

5KCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KCS_007 not in the Motif Atlas

Homologous match to IL_5J7L_251

Geometric discrepancy: 0.1628

The information below is about IL_5J7L_251

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

5KCS|1|1A|C|239
5KCS|1|1A|C|240
5KCS|1|1A|A|241
5KCS|1|1A|G|242
5KCS|1|1A|U|243
5KCS|1|1A|A|244
5KCS|1|1A|G|245
*
5KCS|1|1A|C|253
5KCS|1|1A|G|254
5KCS|1|1A|A|255
5KCS|1|1A|A|256
5KCS|1|1A|C|257
5KCS|1|1A|G|258

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 18

50S ribosomal protein L35

Chain 1P

50S ribosomal protein L15