IL_5KCS_029

3D structure

PDB id

5KCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGG*UUAC

Length

7 nucleotides

Bulged bases

5KCS|1|1A|A|896

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KCS_029 not in the Motif Atlas

Geometric match to IL_5E81_401

Geometric discrepancy: 0.2988

The information below is about IL_5E81_401

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

5KCS|1|1A|G|880
5KCS|1|1A|G|881
5KCS|1|1A|G|882
*
5KCS|1|1A|U|894
5KCS|1|1A|U|895
5KCS|1|1A|A|896
5KCS|1|1A|C|897

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains