IL_5KCS_031
3D structure
- PDB id
- 5KCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GCUAAG*CGAAGC
- Length
- 12 nucleotides
- Bulged bases
- 5KCS|1|1A|A|1156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5KCS_031 not in the Motif Atlas
- Geometric match to IL_4WF9_104
- Geometric discrepancy: 0.1789
- The information below is about IL_4WF9_104
- Detailed Annotation
- UAA/GAN with extra cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_91079.1
- Basepair signature
- cWW-cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 8
Unit IDs
5KCS|1|1A|G|997
5KCS|1|1A|C|998
5KCS|1|1A|U|999
5KCS|1|1A|A|1000
5KCS|1|1A|A|1001
5KCS|1|1A|G|1002
*
5KCS|1|1A|C|1153
5KCS|1|1A|G|1154
5KCS|1|1A|A|1155
5KCS|1|1A|A|1156
5KCS|1|1A|G|1157
5KCS|1|1A|C|1158
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 13
- 50S ribosomal protein L30
- Chain 1B
- 5S ribosomal RNA; 5S rRNA
- Chain 1U
- 50S ribosomal protein L20
- Chain 1V
- 50S ribosomal protein L21
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