IL_5KCS_032

3D structure

PDB id

5KCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UCCCAAAG*CA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KCS_032 not in the Motif Atlas

Homologous match to IL_5J7L_278

Geometric discrepancy: 0.1859

The information below is about IL_5J7L_278

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

5KCS|1|1A|U|1004
5KCS|1|1A|C|1005
5KCS|1|1A|C|1006
5KCS|1|1A|C|1007
5KCS|1|1A|A|1008
5KCS|1|1A|A|1009
5KCS|1|1A|A|1010
5KCS|1|1A|G|1011
*
5KCS|1|1A|C|1150
5KCS|1|1A|A|1151

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1N

50S ribosomal protein L13

Chain 1U

50S ribosomal protein L20