IL_5KCS_042

3D structure

PDB id

5KCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

5KCS|1|1A|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KCS_042 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.1244

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

5KCS|1|1A|C|1208
5KCS|1|1A|U|1209
5KCS|1|1A|G|1210
5KCS|1|1A|C|1211
5KCS|1|1A|G|1212
5KCS|1|1A|A|1213
5KCS|1|1A|A|1214
5KCS|1|1A|G|1215
*
5KCS|1|1A|U|1234
5KCS|1|1A|G|1235
5KCS|1|1A|G|1236
5KCS|1|1A|A|1237
5KCS|1|1A|G|1238

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1U

50S ribosomal protein L20