IL_5KCS_050

3D structure

PDB id

5KCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAAG*CCUGC

Length

9 nucleotides

Bulged bases

5KCS|1|1A|U|1559

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KCS_050 not in the Motif Atlas

Homologous match to IL_5J7L_296

Geometric discrepancy: 0.1592

The information below is about IL_5J7L_296

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_58112.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

5KCS|1|1A|G|1432
5KCS|1|1A|A|1433
5KCS|1|1A|A|1434
5KCS|1|1A|G|1435
*
5KCS|1|1A|C|1557
5KCS|1|1A|C|1558
5KCS|1|1A|U|1559
5KCS|1|1A|G|1560
5KCS|1|1A|C|1561

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1D

50S ribosomal protein L2