IL_5KCS_052

3D structure

PDB id

5KCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UAAG*UGAUG

Length

9 nucleotides

Bulged bases

5KCS|1|1A|U|1523

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KCS_052 not in the Motif Atlas

Homologous match to IL_5J7L_299

Geometric discrepancy: 0.1261

The information below is about IL_5J7L_299

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68574.4

Basepair signature

cWW-tHH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

5KCS|1|1A|U|1468
5KCS|1|1A|A|1469
5KCS|1|1A|A|1470
5KCS|1|1A|G|1471
*
5KCS|1|1A|U|1520
5KCS|1|1A|G|1521
5KCS|1|1A|A|1522
5KCS|1|1A|U|1523
5KCS|1|1A|G|1524

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains