IL_5KCS_056

3D structure

PDB id

5KCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGAG*UGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KCS_056 not in the Motif Atlas

Homologous match to IL_5J7L_303

Geometric discrepancy: 0.117

The information below is about IL_5J7L_303

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

5KCS|1|1A|C|1526
5KCS|1|1A|G|1527
5KCS|1|1A|A|1528
5KCS|1|1A|G|1529
*
5KCS|1|1A|U|1542
5KCS|1|1A|G|1543
5KCS|1|1A|A|1544
5KCS|1|1A|A|1545
5KCS|1|1A|G|1546

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains