IL_5KCS_094

3D structure

PDB id

5KCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KCS_094 not in the Motif Atlas

Homologous match to IL_7A0S_094

Geometric discrepancy: 0.1435

The information below is about IL_7A0S_094

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.5

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

5KCS|1|1A|C|2652
5KCS|1|1A|U|2653
5KCS|1|1A|A|2654
5KCS|1|1A|G|2655
5KCS|1|1A|U|2656
5KCS|1|1A|A|2657
5KCS|1|1A|C|2658
*
5KCS|1|1A|G|2663
5KCS|1|1A|G|2664
5KCS|1|1A|A|2665
5KCS|1|1A|C|2666
5KCS|1|1A|C|2667
5KCS|1|1A|G|2668

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1H

50S ribosomal protein L6

Chain 1w

Tetracycline resistance protein TetM from transposon Tn916