IL_5KCS_098
3D structure
- PDB id
- 5KCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GAUAAG*CGAAAC
- Length
- 12 nucleotides
- Bulged bases
- 5KCS|1|1A|A|2765
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5KCS_098 not in the Motif Atlas
- Homologous match to IL_5J7L_350
- Geometric discrepancy: 0.0921
- The information below is about IL_5J7L_350
- Detailed Annotation
- UAA/GAN with extra cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_49767.8
- Basepair signature
- cWW-cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
5KCS|1|1A|G|2737
5KCS|1|1A|A|2738
5KCS|1|1A|U|2739
5KCS|1|1A|A|2740
5KCS|1|1A|A|2741
5KCS|1|1A|G|2742
*
5KCS|1|1A|C|2762
5KCS|1|1A|G|2763
5KCS|1|1A|A|2764
5KCS|1|1A|A|2765
5KCS|1|1A|A|2766
5KCS|1|1A|C|2767
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 19
- 50S ribosomal protein L36
- Chain 1H
- 50S ribosomal protein L6
- Chain 1N
- 50S ribosomal protein L13
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