IL_5KCS_118

3D structure

PDB id

5KCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

5KCS|1|1a|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KCS_118 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1542

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

5KCS|1|1a|G|147
5KCS|1|1a|G|148
5KCS|1|1a|A|149
5KCS|1|1a|U|150
5KCS|1|1a|A|151
5KCS|1|1a|A|152
5KCS|1|1a|C|153
*
5KCS|1|1a|G|168
5KCS|1|1a|C|169
5KCS|1|1a|U|170
5KCS|1|1a|A|171
5KCS|1|1a|A|172
5KCS|1|1a|U|173
5KCS|1|1a|A|174
5KCS|1|1a|C|175

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1t

30S ribosomal protein S20