IL_5KCS_127
3D structure
- PDB id
- 5KCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CAG*CAGAAG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5KCS_127 not in the Motif Atlas
- Homologous match to IL_5J7L_021
- Geometric discrepancy: 0.156
- The information below is about IL_5J7L_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_33323.1
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
5KCS|1|1a|C|440
5KCS|1|1a|A|441
5KCS|1|1a|G|442
*
5KCS|1|1a|C|492
5KCS|1|1a|A|493
5KCS|1|1a|G|494
5KCS|1|1a|A|495
5KCS|1|1a|A|496
5KCS|1|1a|G|497
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1d
- 30S ribosomal protein S4
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